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I'd like to remap Command+s to save files in Atom, but I can't figure out where to disable the workspace overview feature that's already mapped to it. Any ideas?

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You can change the key show-desktop in org.gnome.desktop.wm.keybindings via dconf-editor or gsettings in a terminal window. It defaults to ['<Super>Down', '<Super>s'] so if you only want to disable Super+s you can set it to ['down'] for instance.

$ gsettings set org.gnome.desktop.wm.keybindings show-desktop "['<Super>down']"

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